STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (563 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase.
 
 0.999
hutI
Imidazolonepropionase.
 
 
 0.999
SDJ28007.1
Imidazolonepropionase.
 
 
 0.954
SDL03750.1
5-methylthioadenosine/S-adenosylhomocysteine deaminase.
  
 
 0.865
SDL03716.1
N-carbamoyl-L-amino-acid hydrolase.
       0.791
SDJ51184.1
Fumarate reductase flavoprotein subunit.
     
 0.650
SDK04893.1
Fumarate reductase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.650
msrA-2
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.507
SDL03785.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.442
Your Current Organism:
Paenibacillus typhae
NCBI taxonomy Id: 1174501
Other names: CGMCC 1.11012, DSM 25190, P. typhae, Paenibacillus sp. enrichment culture clone xj7, Paenibacillus sp. xj7, Paenibacillus typhae Kong et al. 2013, strain xj7
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