Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_00560Hypothetical protein. (75 aa)    
Predicted Functional Partners:
GWL_00570
2-polyprenyl-6-methoxyphenol hydroxylase.
 
    0.924
GWL_00580
Zn-dependent hydrolase.
 
     0.913
GWL_10080
2-polyprenyl-6-methoxyphenol hydroxylase.
 
    0.797
GWL_00610
Transcription regulator protein.
 
     0.675
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.633
GWL_10060
Transcription regulator protein.
  
     0.630
GWL_00590
IclR family transcription regulator protein.
 
     0.603
GWL_00550
Major facilitator superfamily permease.
       0.580
GWL_04900
Maleylacetoacetate isomerase.
 
     0.528
GWL_35420
Transcription regulator protein.
  
     0.470
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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