GWL_00680 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_00680

General stress protein. (68 aa)

Predicted Functional Partners:

GWL_16780

0.580

GWL_00690

0.549

GWL_00700

0.479

GWL_06020

0.479

GWL_23990

0.466

GWL_05900

0.411

GWL_05940

0.411

GWL_29220

0.409

GWL_29250

0.409

rplY

0.403

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_00680	GWL_00690	GWL_00680	GWL_00690	General stress protein.	Hypothetical protein.	0.549
GWL_00680	GWL_00700	GWL_00680	GWL_00700	General stress protein.	Hypothetical protein.	0.479
GWL_00680	GWL_05900	GWL_00680	GWL_05900	General stress protein.	Hypothetical protein.	0.411
GWL_00680	GWL_05940	GWL_00680	GWL_05940	General stress protein.	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	0.411
GWL_00680	GWL_06020	GWL_00680	GWL_06020	General stress protein.	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	0.479
GWL_00680	GWL_16780	GWL_00680	GWL_16780	General stress protein.	Hypothetical protein.	0.580
GWL_00680	GWL_23990	GWL_00680	GWL_23990	General stress protein.	Regulator of disulfide bond formation redox protein.	0.466
GWL_00680	GWL_29220	GWL_00680	GWL_29220	General stress protein.	UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein.	0.409
GWL_00680	GWL_29250	GWL_00680	GWL_29250	General stress protein.	Hypothetical protein.	0.409
GWL_00680	rplY	GWL_00680	GWL_32990	General stress protein.	Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.403
GWL_00690	GWL_00680	GWL_00690	GWL_00680	Hypothetical protein.	General stress protein.	0.549
GWL_00690	GWL_00700	GWL_00690	GWL_00700	Hypothetical protein.	Hypothetical protein.	0.664
GWL_00700	GWL_00680	GWL_00700	GWL_00680	Hypothetical protein.	General stress protein.	0.479
GWL_00700	GWL_00690	GWL_00700	GWL_00690	Hypothetical protein.	Hypothetical protein.	0.664
GWL_05900	GWL_00680	GWL_05900	GWL_00680	Hypothetical protein.	General stress protein.	0.411
GWL_05900	GWL_23990	GWL_05900	GWL_23990	Hypothetical protein.	Regulator of disulfide bond formation redox protein.	0.516
GWL_05940	GWL_00680	GWL_05940	GWL_00680	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	General stress protein.	0.411
GWL_05940	GWL_23990	GWL_05940	GWL_23990	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	Regulator of disulfide bond formation redox protein.	0.516
GWL_06020	GWL_00680	GWL_06020	GWL_00680	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	General stress protein.	0.479
GWL_06020	GWL_23990	GWL_06020	GWL_23990	Hypothetical protein; Belongs to the UPF0337 (CsbD) family.	Regulator of disulfide bond formation redox protein.	0.516