Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_00930Membrane protein. (137 aa)    
Predicted Functional Partners:
GWL_18660
Cytochrome c family protein.
    
  0.644
GWL_27840
Mg(2+) transport ATPase.
   
  0.614
mnmG
Glucose inhibited division GidA protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.614
GWL_00920
Hypothetical protein.
  
  
 0.585
GWL_26100
Hypothetical protein; Belongs to the UPF0276 family.
  
  
 0.560
GWL_26110
Hypothetical protein.
  
  
 0.558
GWL_00940
N6-adenine-specific DNA methylase; Belongs to the methyltransferase superfamily.
       0.475
GWL_25310
Serine endopeptidase.
   
   0.466
GWL_35330
Hypothetical protein.
  
     0.458
GWL_26080
Integral membrane protein.
  
  
 0.447
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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