Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_01440Hypothetical protein. (475 aa)    
Predicted Functional Partners:
GWL_01430
Hypothetical protein.
    0.990
GWL_02750
Hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
   
  0.918
GWL_01510
Transglutaminase/cysteine protease.
 
    0.893
GWL_01420
Proteasome-type protease.
 
    0.888
GWL_33030
Glutamate synthase large subunit oxidoreductase.
     
  0.884
GWL_01480
Transglutaminase-like superfamily domain-containing protein.
 
    0.854
GWL_01500
Hypothetical protein.
 
   
0.780
GWL_19020
Hypothetical protein.
 
     0.489
GWL_01450
Hypothetical protein.
       0.444
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
    
  0.427
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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