Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_01470Poly-beta-hydroxyalkanoate depolymerase. (408 aa)    
Predicted Functional Partners:
GWL_23420
Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.965
GWL_10630
poly[D(-)-3-hydroxyalkanoate] depolymerase.
     
  0.876
GWL_44120
Poly(3-hydroxyalkanoate)synthetase.
 
  
0.773
GWL_20570
Hypothetical protein.
     
  0.694
GWL_20860
Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.663
GWL_23400
Polybetahydroxybutyrate accumulation regulatory protein PhbF.
 
   
 0.589
GWL_01460
Glutathione S-transferase.
 
     0.518
GWL_26720
FabD/lysophospholipase-like esterase.
  
     0.485
GWL_20240
Poly(3-hydroxybutyrate) depolymerase.
     
 0.451
clpX
ATP-dependent protease ATP-binding specificity subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.445
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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