Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_01600Transmembrane protein. (320 aa)    
Predicted Functional Partners:
GWL_16560
Intracellular septation A protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
     0.625
GWL_12300
Spermidine synthase.
  
     0.555
GWL_12950
Hypothetical protein; Belongs to the UPF0307 family.
  
     0.546
GWL_46100
Membrane protein.
  
     0.461
GWL_22980
FtsH interacting integral membrane protein; Belongs to the BI1 family.
   
  
 0.449
GWL_01590
Hypothetical protein.
       0.436
thrB
Homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
     0.422
GWL_16450
Peptidyl-prolyl cis-trans isomerase D.
  
     0.421
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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