Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_01920Signal peptide protein; Belongs to the UPF0312 family. (190 aa)    
Predicted Functional Partners:
GWL_01940
Cytochrome b561 protein.
 
  
 0.820
GWL_01930
Signal peptide protein; Belongs to the UPF0312 family.
 
    
0.783
GWL_18550
Hypothetical protein.
 
  
 0.612
GWL_01910
Hypothetical protein.
       0.592
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.524
GWL_33140
Cytochrome b561 protein.
 
  
 0.513
GWL_18650
Cytochrome b561 protein.
 
  
 0.443
GWL_01890
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.419
GWL_32840
Oxidoreductase.
 
 
   0.411
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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