Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_02200Hypothetical protein. (531 aa)    
Predicted Functional Partners:
GWL_20170
Hypothetical protein.
 
 0.925
GWL_23550
Diguanylate cyclase with PAS/PAC sensor protein.
 
 0.911
GWL_44070
GGDEF domain-containing protein.
 
  0.892
GWL_22050
Hypothetical protein.
 
 
 0.883
GWL_44250
Diguanylate cyclase.
 
 0.881
GWL_04320
Hypothetical protein.
 
 
  0.870
GWL_40850
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domain-containing protein.
 
 
 0.870
GWL_15390
Signal transduction histidine kinase.
 
 
 0.868
GWL_31070
GGDEF domain-containing protein.
 
 
  0.868
GWL_16710
Transmembrane protein.
 
 
  0.867
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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