Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_02560TRAP-type C4-dicarboxylate transport system large permease. (426 aa)    
Predicted Functional Partners:
GWL_02550
TRAP-type C4-dicarboxylate transport system small permease.
 0.996
GWL_02540
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
 
 0.995
GWL_31870
TRAP-type C4-dicarboxylate transport system dctQ-M fusion permease large permease.
 
0.955
GWL_04760
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
 0.949
GWL_21480
TRAP-type C4-dicarboxylate transport system small permease.
 0.949
GWL_00250
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
 0.942
GWL_31880
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
 0.937
GWL_04750
TrapT dctQ-M fusion permease, dicarboxylate transport protein.
 
0.929
GWL_22190
TRAP-type C4-dicarboxylate-binding periplasmic protein.
 
 
 0.927
GWL_21490
TRAP-type C4-dicarboxylate transport system periplasmic protein.
 
 
 0.910
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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