Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_03440Hypothetical protein. (390 aa)    
Predicted Functional Partners:
GWL_03450
TonB-dependent siderophore receptor protein.
 
     0.813
GWL_15190
Homoserine dehydrogenase.
    
 0.769
GWL_37360
Methionine synthase I, cobalamin-binding domain-containing protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.741
GWL_03460
Membrane-bound lytic peptidoglycan transglycosylase B protein.
       0.517
GWL_01530
Hypothetical protein.
  
     0.462
GWL_23350
Cystathionine beta-lyase.
  
  
  0.426
GWL_34040
Hypothetical protein.
  
     0.424
GWL_15210
Threonine synthase.
    
 0.419
GWL_21090
Precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase.
  
    0.417
GWL_15670
Aspartokinase; Belongs to the aspartokinase family.
  
 
 0.406
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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