GWL_03620 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_03620

Outer membrane Iron(III) dicitrate transport protein. (703 aa)

Predicted Functional Partners:

GWL_03660

0.742

GWL_39520

0.566

GWL_19870

0.484

GWL_25590

0.464

GWL_24380

0.456

GWL_03850

0.428

GWL_10340

0.426

GWL_10870

0.426

GWL_45570

0.426

GWL_18530

0.423

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GWL_03620	GWL_03660	Outer membrane Iron(III) dicitrate transport protein.	Hypothetical protein.	0.742
GWL_03620	GWL_03850	Outer membrane Iron(III) dicitrate transport protein.	Hypothetical protein.	0.428
GWL_03620	GWL_10340	Outer membrane Iron(III) dicitrate transport protein.	Alkanesulfonates ABC transporter periplasmic protein.	0.426
GWL_03620	GWL_10870	Outer membrane Iron(III) dicitrate transport protein.	Alkanesulfonates ABC transporter periplasmic protein.	0.426
GWL_03620	GWL_18530	Outer membrane Iron(III) dicitrate transport protein.	Ferric regulator sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.	0.423
GWL_03620	GWL_19870	Outer membrane Iron(III) dicitrate transport protein.	Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein.	0.484
GWL_03620	GWL_24380	Outer membrane Iron(III) dicitrate transport protein.	ABC-type Fe3+-siderophore transport system permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.456
GWL_03620	GWL_25590	Outer membrane Iron(III) dicitrate transport protein.	TonB-dependent siderophore receptor.	0.464
GWL_03620	GWL_39520	Outer membrane Iron(III) dicitrate transport protein.	Membrane-associated, metal-dependent hydrolase.	0.566
GWL_03620	GWL_45570	Outer membrane Iron(III) dicitrate transport protein.	Periplasmic protein TonB, links inner and outer membrane.	0.426
GWL_03660	GWL_03620	Hypothetical protein.	Outer membrane Iron(III) dicitrate transport protein.	0.742
GWL_03660	GWL_18530	Hypothetical protein.	Ferric regulator sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.	0.887
GWL_03660	GWL_25590	Hypothetical protein.	TonB-dependent siderophore receptor.	0.909
GWL_03660	GWL_45570	Hypothetical protein.	Periplasmic protein TonB, links inner and outer membrane.	0.501
GWL_03850	GWL_03620	Hypothetical protein.	Outer membrane Iron(III) dicitrate transport protein.	0.428
GWL_03850	GWL_18530	Hypothetical protein.	Ferric regulator sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.	0.408
GWL_03850	GWL_39520	Hypothetical protein.	Membrane-associated, metal-dependent hydrolase.	0.502
GWL_10340	GWL_03620	Alkanesulfonates ABC transporter periplasmic protein.	Outer membrane Iron(III) dicitrate transport protein.	0.426
GWL_10340	GWL_10870	Alkanesulfonates ABC transporter periplasmic protein.	Alkanesulfonates ABC transporter periplasmic protein.	0.813
GWL_10340	GWL_19870	Alkanesulfonates ABC transporter periplasmic protein.	Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein.	0.864