Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_03970Sugar ABC transporter periplasmic protein. (357 aa)    
Predicted Functional Partners:
GWL_03960
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.979
GWL_03940
Sugar ABC transporter ATPase.
 
 
 0.969
GWL_03990
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.957
GWL_03980
Sugar ABC transporter ATPase.
 
 0.917
GWL_38590
D-xylose ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.875
GWL_03930
Sugar ABC transporter periplasmic protein.
 
 
 0.814
GWL_03950
Sugar ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.809
GWL_31510
Inner-membrane translocator ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
     
  0.640
GWL_12590
Multidrug ABC transporter ATPase.
     
  0.543
GWL_40840
Extracellular solute-binding, family 1 protein.
  
 
 0.512
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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