Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_04080Hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (425 aa)    
Predicted Functional Partners:
GWL_04140
Metal-dependent hydrolase.
 
  
 0.969
GWL_38620
Metal-dependent hydrolase.
 
  
 0.946
GWL_32610
Short-chain alcohol dehydrogenase.
  
  
 0.909
GWL_03910
2-keto-3-deoxygalactonate kinase.
 
 
 0.875
GWL_04090
Short-chain alcohol dehydrogenase.
 
  
  0.834
GWL_46060
D-arabinitol 4-dehydrogenase.
    
 0.759
GWL_09500
2-ketogluconate kinase.
    
 0.717
GWL_04100
Protein of unknown function DUF718.
 
   
 0.712
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.702
GWL_32700
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
  0.702
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.