Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_04140Metal-dependent hydrolase. (288 aa)    
Predicted Functional Partners:
GWL_04090
Short-chain alcohol dehydrogenase.
 
  
  0.971
GWL_04080
Hypothetical protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.969
GWL_04100
Protein of unknown function DUF718.
 
   
 0.819
GWL_38620
Metal-dependent hydrolase.
     
  0.813
GWL_03890
Galactonate dehydratase.
 
  
 0.661
GWL_06840
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
 
     0.639
GWL_07130
Electron transfer component of chlorobenzoate 1,2-dioxygenase.
    
  0.619
GWL_27360
Chaperone activity ATPase.
    
  0.619
GWL_30180
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
    
  0.619
GWL_43260
NAD-dependent dehydrogenase.
  
  
 0.597
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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