Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_04210Hypothetical protein. (139 aa)    
Predicted Functional Partners:
GWL_04190
Lipoprotein.
 
     0.961
GWL_04170
Hypothetical protein.
 
   
 0.959
GWL_04200
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   
 0.950
GWL_04160
Dehydrogenase.
 
   
 0.918
GWL_04180
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.904
GWL_30900
Sodium:galactoside symporter protein.
 
     0.806
GWL_30890
Hypothetical protein.
 
   
 0.803
GWL_04150
TetR family transcription regulator protein.
 
     0.716
GWL_00810
Putative hydrolase.
    
 0.711
GWL_20180
Phenazine biosynthesis epimerase.
  
 
 0.620
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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