Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_042902-deoxy-D-gluconate 3-dehydrogenase. (241 aa)    
Predicted Functional Partners:
GWL_04280
D-ribulose/ribitol kinase.
 
  
 0.861
GWL_14980
TPR repeat containing protein.
   
 0.840
GWL_04270
Ribitol 2-dehydrogenase.
 
  
 
0.829
GWL_06890
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.801
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.792
GWL_18480
Hypothetical protein.
  
 0.783
GWL_20640
Ankyrin repeat-containing signal peptide protein.
    
 0.778
GWL_33030
Glutamate synthase large subunit oxidoreductase.
     
 0.764
GWL_04200
3-oxoacyl-[acyl-carrier-protein] reductase.
  
 
  0.735
GWL_30680
Acyl carrier protein.
  
 0.704
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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