Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_04300Hypothetical protein. (71 aa)    
Predicted Functional Partners:
tolB
Periplasmic component of the Tol biopolymer transport system protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.797
GWL_36150
Hypothetical protein.
    
 0.769
GWL_23300
Flagellar motor component protein.
    
 0.768
GWL_14640
Flagellar basal-body rod protein FlgE.
   
 0.762
GWL_14190
Periplasmic polysaccharide export protein.
   
 0.751
GWL_32960
Outer-membrane lipoprotein lolB precursor lipoprotein; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
 
 0.706
GWL_16140
Transmembrane protein; Belongs to the skp family.
  
 
 0.705
GWL_10020
Hypothetical protein.
   
 0.697
GWL_32630
Signal peptide protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
   
 0.697
GWL_25410
Outer membrane W protein.
  
  
 0.690
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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