Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_04460Spermidine/putrescine ABC transporter periplasmic protein. (347 aa)    
Predicted Functional Partners:
GWL_04440
Spermidine/putrescine ABC transporter permease.
 
 0.998
GWL_04450
Spermidine/putrescine ABC transporter permease.
 
 
 0.995
potA
Spermidine/putrescine ABC transporter ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.991
GWL_38460
ABC transporter membrane spanning protein (polyamine).
 
 0.986
GWL_45100
Binding-protein-dependent transport systems inner membrane component.
 
 0.985
GWL_01060
Spermidine/putrescine ABC transporter permease.
  
 0.984
GWL_38450
Spermidine/putrescine transport protein, ABC transporter permease protein.
 
 
 0.941
GWL_45090
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.939
potA-2
Spermidine/putrescine transport system ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.922
GWL_45080
ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.920
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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