Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_04600L-idonate 5-dehydrogenase. (345 aa)    
Predicted Functional Partners:
GWL_04590
Gluconate 5-dehydrogenase oxidoreductase.
 
 
 0.938
bioF
8-amino-7-oxononanoate (7-keto-8-aminopelargonate) synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
 
 0.847
GWL_06270
Alcohol dehydrogenase superfamily, zinc-containing:Alcohol dehydrogenase, zinc-containing.
  
 
 0.825
GWL_46060
D-arabinitol 4-dehydrogenase.
 
  
 0.798
GWL_04580
Gluconokinase; Belongs to the FGGY kinase family.
  
 
 0.770
GWL_42270
Threonine dehydratase.
   
 
 0.731
GWL_45980
Fructokinase.
  
 
 0.729
glk
Glucokinase; Belongs to the bacterial glucokinase family.
    
 0.728
GWL_30500
UDP-glucose 6-dehydrogenase.
  
 
 0.724
GWL_21260
Phosphoglucomutase.
   
 0.722
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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