Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_05480Hypothetical protein. (119 aa)    
Predicted Functional Partners:
GWL_05490
Putative glycosyltransferase.
 
 
 0.865
GWL_05500
Hypothetical protein.
       0.608
GWL_15120
Polymixin resistance glycosyltransferase transmembrane protein.
 
 
 0.588
GWL_20860
Poly(3-hydroxyalkanoate) synthetase.
  
     0.532
GWL_30720
Glycosyl transferase, group 2 family protein.
  
 
 0.510
GWL_46340
Hypothetical protein.
  
 
 0.509
GWL_14980
TPR repeat containing protein.
     
 0.486
GWL_05510
LacI family transcription regulator protein.
       0.438
GWL_06930
Cellulose synthase catalytic subunit.
  
 
 0.418
GWL_08580
Glycosyl transferase family protein.
  
 
 0.418
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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