Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_06070Nitrate transporter periplasmic protein. (433 aa)    
Predicted Functional Partners:
GWL_06080
Nitrate transporter permease.
 
 0.999
GWL_06090
Nitrate transporter ATPase.
 0.996
GWL_27090
ABC transporter-like protein.
 0.981
GWL_27100
Nitrate ABC transporter inner membrane subunit.
 
 0.980
GWL_22520
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.970
GWL_27110
ABC transporter nitrate-binding protein.
  
  
 
0.846
GWL_09380
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 0.838
GWL_19890
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 0.831
GWL_31350
ABC transporter ATP-binding protein.
 0.811
GWL_45360
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 0.811
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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