Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_06920Hypothetical protein. (437 aa)    
Predicted Functional Partners:
GWL_06930
Cellulose synthase catalytic subunit.
 
 
 0.964
GWL_06940
Cyclic di-GMP binding protein WssC; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
 
 0.954
GWL_41640
Chromosome partitioning ParB protein; Belongs to the ParB family.
 
 
 0.915
GWL_06960
Cellulose synthase operon protein C.
 
   
 0.868
GWL_06950
endo-1,4-D-glucanase.
 
   
 0.867
GWL_14280
Glycosyl transferase group 2 family protein.
  
 
 0.774
GWL_14980
TPR repeat containing protein.
  
 
 0.742
GWL_08580
Glycosyl transferase family protein.
  
 
 0.710
GWL_14330
Hypothetical protein.
  
 
 0.710
GWL_06970
Cell morphology protein; Overlaps another CDS with the same product name.
  
  
 0.700
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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