Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_07500Transcription regulator protein. (205 aa)    
Predicted Functional Partners:
GWL_07480
Cation/multidrug efflux pump protein.
     
 0.788
GWL_07490
Outer membrane drug efflux lipoprotein.
       0.784
GWL_07470
RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.742
GWL_07460
Transcription regulator protein.
       0.498
ftsZ
Cell division GTPase; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
    
 
 0.481
ttcA
Cell cycle control ATPase; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
  
   0.464
GWL_04350
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein.
  
 
 0.413
GWL_07260
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein.
  
 
 0.400
GWL_33740
Vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase.
  
 
 0.400
GWL_35480
Phenylacetic acid degradation NADH oxidoreductase.
  
 
 0.400
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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