Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GWL_07920Cytochrome c protein. (433 aa)    
Predicted Functional Partners:
GWL_07930
Cytochrome c553 protein.
 0.990
GWL_34940
Transmembrane ubiquinol-cytochrome C reductase; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.943
GWL_39190
Choline dehydrogenase-like protein.
 
 
 0.906
GWL_34930
Cytochrome b subunit transmembrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.900
GWL_27520
Choline dehydrogenase.
 
 
 0.899
GWL_25510
Cbb3-type cytochrome c oxidase subunit II transmembrane protein.
  
 0.884
GWL_18930
Cytochrome o ubiquinol oxidase subunit III protein.
  
 0.883
GWL_35750
Cytochrome c oxidase subunit III transmembrane protein.
  
 0.883
GWL_25520
Cbb3-type cytochrome c oxidase subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family.
  
 0.881
GWL_22520
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.861
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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