GWL_08050 protein (Herbaspirillum sp. GW103)

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GWL_08050

Cold-shock DNA-binding domain-containing protein. (68 aa)

Predicted Functional Partners:

GWL_28700

0.879

rplW

0.789

rpsL

0.778

rpsQ

0.774

rplC

0.769

rpmC

0.769

rpsE

0.764

rplB

0.758

rph

0.755

rnr

0.754

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_08050	GWL_28700	GWL_08050	GWL_28700	Cold-shock DNA-binding domain-containing protein.	ATP-dependent RNA helicase.	0.879
GWL_08050	rnr	GWL_08050	GWL_13010	Cold-shock DNA-binding domain-containing protein.	Exoribonuclease RNAse R protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.754
GWL_08050	rph	GWL_08050	GWL_15600	Cold-shock DNA-binding domain-containing protein.	tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.755
GWL_08050	rplB	GWL_08050	GWL_42950	Cold-shock DNA-binding domain-containing protein.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.758
GWL_08050	rplC	GWL_08050	GWL_42920	Cold-shock DNA-binding domain-containing protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.769
GWL_08050	rplW	GWL_08050	GWL_42940	Cold-shock DNA-binding domain-containing protein.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.789
GWL_08050	rpmC	GWL_08050	GWL_43000	Cold-shock DNA-binding domain-containing protein.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.769
GWL_08050	rpsE	GWL_08050	GWL_43090	Cold-shock DNA-binding domain-containing protein.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.764
GWL_08050	rpsL	GWL_08050	GWL_42870	Cold-shock DNA-binding domain-containing protein.	30s ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.778
GWL_08050	rpsQ	GWL_08050	GWL_43010	Cold-shock DNA-binding domain-containing protein.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.774
GWL_28700	GWL_08050	GWL_28700	GWL_08050	ATP-dependent RNA helicase.	Cold-shock DNA-binding domain-containing protein.	0.879
GWL_28700	rnr	GWL_28700	GWL_13010	ATP-dependent RNA helicase.	Exoribonuclease RNAse R protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.673
GWL_28700	rph	GWL_28700	GWL_15600	ATP-dependent RNA helicase.	tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.774
GWL_28700	rplB	GWL_28700	GWL_42950	ATP-dependent RNA helicase.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.758
GWL_28700	rplC	GWL_28700	GWL_42920	ATP-dependent RNA helicase.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.794
GWL_28700	rplW	GWL_28700	GWL_42940	ATP-dependent RNA helicase.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.800
GWL_28700	rpmC	GWL_28700	GWL_43000	ATP-dependent RNA helicase.	50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.747
GWL_28700	rpsE	GWL_28700	GWL_43090	ATP-dependent RNA helicase.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.951
GWL_28700	rpsL	GWL_28700	GWL_42870	ATP-dependent RNA helicase.	30s ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.943
GWL_28700	rpsQ	GWL_28700	GWL_43010	ATP-dependent RNA helicase.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.945