Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_08180Cysteine hydrolase falmily protein. (231 aa)    
Predicted Functional Partners:
GWL_08260
Amidase family protein.
  
 0.993
GWL_38290
Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A.
  
 0.985
GWL_08160
Isochorismatase family protein.
 
  
 
0.973
GWL_08150
Hypothetical protein.
 
    0.901
GWL_08200
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.879
GWL_08210
ABC transporter periplasmic/surface lipoprotein.
 
     0.878
GWL_08170
ABC transporter ATPase.
 
     0.869
GWL_08190
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
     0.865
GWL_08140
Transcription regulator protein.
 
     0.760
GWL_31340
Asp/Glu racemase.
 
  
 0.716
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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