Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_08330Hypothetical protein. (170 aa)    
Predicted Functional Partners:
GWL_07030
Hypothetical protein.
  
     0.711
GWL_07040
SMC domain-containing protein.
  
     0.683
GWL_07010
Hypothetical protein.
  
     0.663
GWL_43390
Hypothetical protein.
  
     0.570
GWL_01620
Transcription regulator protein.
  
     0.542
GWL_19110
Cupin superfamily protein.
  
     0.538
GWL_00090
TetR family transcription regulator protein.
  
     0.524
GWL_08340
SAM-dependent methyltransferase.
       0.497
GWL_26990
Transmembrane protein.
  
     0.487
GWL_10770
Phasin family protein.
  
     0.449
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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