Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
GWL_08830Carbon-nitrogen hydrolase family protein. (323 aa)    
Predicted Functional Partners:
GWL_08820
Dihydropyrimidinase.
 
 
 0.960
GWL_36410
Hydantoin racemase.
     0.919
GWL_33030
Glutamate synthase large subunit oxidoreductase.
    
 0.892
GWL_31330
Dihydropyrimidinase.
 
 
 0.823
GWL_32340
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.817
GWL_08840
Amino acid ABC transporter solute-binding protein.
 
     0.794
GWL_08800
Hypothetical protein; Belongs to the DapA family.
 
     0.784
GWL_08810
3-oxoacyl-[acyl-carrier-protein] reductase.
   
  0.781
GWL_12300
Spermidine synthase.
  
 
 0.760
GWL_00730
Glutathione-dependent formaldehyde dehydrogenase.
   
 0.759
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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