GWL_08900 protein (Herbaspirillum sp. GW103)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

GWL_08900

Hypothetical protein. (331 aa)

Predicted Functional Partners:

GWL_08910

0.979

GWL_08890

0.900

GWL_36480

0.878

GWL_46230

0.868

GWL_28050

0.830

GWL_10890

0.814

GWL_30390

0.811

GWL_19880

0.798

GWL_45350

0.783

GWL_08230

0.779

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GWL_08230	GWL_08890	Binding-protein-dependent transport systems inner membrane component.	ATP-binding component of ABC transporter.	0.903
GWL_08230	GWL_08900	Binding-protein-dependent transport systems inner membrane component.	Hypothetical protein.	0.779
GWL_08230	GWL_08910	Binding-protein-dependent transport systems inner membrane component.	Permease of ABC transporter.	0.523
GWL_08230	GWL_19880	Binding-protein-dependent transport systems inner membrane component.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.832
GWL_08230	GWL_28050	Binding-protein-dependent transport systems inner membrane component.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.710
GWL_08230	GWL_30390	Binding-protein-dependent transport systems inner membrane component.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.716
GWL_08230	GWL_36480	Binding-protein-dependent transport systems inner membrane component.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.708
GWL_08230	GWL_46230	Binding-protein-dependent transport systems inner membrane component.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.821
GWL_08890	GWL_08230	ATP-binding component of ABC transporter.	Binding-protein-dependent transport systems inner membrane component.	0.903
GWL_08890	GWL_08900	ATP-binding component of ABC transporter.	Hypothetical protein.	0.900
GWL_08890	GWL_08910	ATP-binding component of ABC transporter.	Permease of ABC transporter.	0.963
GWL_08890	GWL_10890	ATP-binding component of ABC transporter.	Alkanesulfonates ABC transporter permease.	0.863
GWL_08890	GWL_19880	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.882
GWL_08890	GWL_28050	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.903
GWL_08890	GWL_30390	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.889
GWL_08890	GWL_36480	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.886
GWL_08890	GWL_45350	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.914
GWL_08890	GWL_46230	ATP-binding component of ABC transporter.	Nitrate/sulfonate/bicarbonate ABC transporter permease.	0.833
GWL_08900	GWL_08230	Hypothetical protein.	Binding-protein-dependent transport systems inner membrane component.	0.779
GWL_08900	GWL_08890	Hypothetical protein.	ATP-binding component of ABC transporter.	0.900