Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_09470Amino acid ABC transporter permease. (216 aa)    
Predicted Functional Partners:
GWL_09480
Amino acid ABC transporter ATPase.
 
 0.998
GWL_09460
Amino acid ABC transporter permease.
 
  
 
0.991
GWL_37080
Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.
 
  0.965
GWL_36360
Polar amino acid ABC transporter ATPase.
 
 0.955
GWL_39680
Amino acid ABC transporter ATPase.
 
 0.952
GWL_15830
Amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein; Belongs to the bacterial solute-binding protein 3 family.
 
  0.950
GWL_32570
Amino acid ABC transporter ATPase.
 
 0.950
GWL_09450
Amino-acid ABC transporter periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
  0.946
GWL_17030
Glutamine ABC transporter ATPase.
 
 0.946
GWL_42340
Glutamine ABC transporter ATPase.
 
 0.946
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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