Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_09900Outer membrane lipoprotein. (591 aa)    
Predicted Functional Partners:
GWL_09890
Signal peptide protein.
 
 0.999
GWL_04030
Outer membrane porin.
  
   
 0.632
GWL_19060
Transmembrane protein.
  
     0.558
GWL_13760
Hypothetical protein.
  
     0.524
GWL_33860
Porin transmembrane protein.
  
   
 0.518
GWL_02770
Hypothetical protein.
  
    0.514
GWL_09070
Outer membrane porin.
  
   
 0.498
GWL_24530
Permease.
  
 
  0.483
GWL_22920
Hypothetical protein.
  
   
 0.481
GWL_08130
Riboflavin biosynthesis protein; Belongs to the ribF family.
     
  0.477
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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