Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_10730Xylanase/chitin deacetylase. (273 aa)    
Predicted Functional Partners:
GWL_10720
Signal peptide protein.
 
   
 0.929
GWL_10740
Transmembrane protein; Overlaps another CDS with the same product name.
 
     0.909
GWL_10750
Transmembrane protein; Overlaps another CDS with the same product name.
 
    0.832
GWL_02720
Inactivated superfamily I helicase.
 
     0.646
GWL_02670
undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.
  
 
 0.610
GWL_15150
undecaprenyl-phosphate-4-amino-L-arabinose-- lipid A 4-amino-L-arabinosyltransferase.
  
 
 0.610
GWL_10760
Molybdopterin biosynthesis enzyme protein.
     
 0.561
GWL_02730
ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.529
GWL_26200
Transthyreretyn-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
  
 
  0.513
GWL_14980
TPR repeat containing protein.
     
 0.510
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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