Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_10750Transmembrane protein; Overlaps another CDS with the same product name. (281 aa)    
Predicted Functional Partners:
GWL_10740
Transmembrane protein; Overlaps another CDS with the same product name.
 
     0.897
GWL_10730
Xylanase/chitin deacetylase.
 
    0.832
GWL_10760
Molybdopterin biosynthesis enzyme protein.
 
     0.729
GWL_10720
Signal peptide protein.
 
     0.704
GWL_42440
Transmembrane protein.
  
     0.678
GWL_05740
Hypothetical protein.
  
     0.637
GWL_01560
Hypothetical protein.
  
     0.622
GWL_41370
Hypothetical protein.
 
     0.617
GWL_35760
Transmembrane protein.
  
     0.616
GWL_09550
Transmembrane protein.
  
     0.577
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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