Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_11290MocR family transcription regulator protein. (480 aa)    
Predicted Functional Partners:
GWL_33030
Glutamate synthase large subunit oxidoreductase.
     
  0.786
GWL_30580
Chorismate mutase/prephenate dehydratase.
    
 0.602
GWL_11300
Glutathione S-transferase family protein.
       0.564
GWL_32840
Oxidoreductase.
    
  0.549
GWL_22140
GntR family transcriptional regulator.
  
  
 
0.525
GWL_04490
MocR family transcription regulator protein.
  
  
 
0.521
GWL_08760
2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase.
     
  0.512
GWL_17820
Dihydrolipoamide dehydrogenase.
     
  0.512
GWL_33200
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.485
GWL_04480
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.476
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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