GWL_11620 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_11620

Lipase transmembrane protein. (309 aa)

Predicted Functional Partners:

GWL_42040

0.754

GWL_14220

0.692

ubiB

0.623

GWL_20350

0.622

rplC

0.613

rplL

0.612

rpmG

0.607

GWL_05810

0.607

rpsP

0.607

GWL_14080

0.607

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_05810	GWL_11620	GWL_05810	GWL_11620	50S ribosomal protein L28.	Lipase transmembrane protein.	0.607
GWL_05810	GWL_14080	GWL_05810	GWL_14080	50S ribosomal protein L28.	50S ribosomal protein L20.	0.982
GWL_05810	rplC	GWL_05810	GWL_42920	50S ribosomal protein L28.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.989
GWL_05810	rplL	GWL_05810	GWL_42820	50S ribosomal protein L28.	50s ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.985
GWL_05810	rpmG	GWL_05810	GWL_05800	50S ribosomal protein L28.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.999
GWL_05810	rpsP	GWL_05810	GWL_09560	50S ribosomal protein L28.	30s ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.989
GWL_11620	GWL_05810	GWL_11620	GWL_05810	Lipase transmembrane protein.	50S ribosomal protein L28.	0.607
GWL_11620	GWL_14080	GWL_11620	GWL_14080	Lipase transmembrane protein.	50S ribosomal protein L20.	0.607
GWL_11620	GWL_14220	GWL_11620	GWL_14220	Lipase transmembrane protein.	Exopolysaccharide methanolan synthase.	0.692
GWL_11620	GWL_20350	GWL_11620	GWL_20350	Lipase transmembrane protein.	Long-chain acyl-CoA synthetase.	0.622
GWL_11620	GWL_42040	GWL_11620	GWL_42040	Lipase transmembrane protein.	Hypothetical protein.	0.754
GWL_11620	rplC	GWL_11620	GWL_42920	Lipase transmembrane protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.613
GWL_11620	rplL	GWL_11620	GWL_42820	Lipase transmembrane protein.	50s ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.612
GWL_11620	rpmG	GWL_11620	GWL_05800	Lipase transmembrane protein.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.607
GWL_11620	rpsP	GWL_11620	GWL_09560	Lipase transmembrane protein.	30s ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.607
GWL_11620	ubiB	GWL_11620	GWL_32780	Lipase transmembrane protein.	Ubiquinone biosynthesis transmembrane protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.	0.623
GWL_14080	GWL_05810	GWL_14080	GWL_05810	50S ribosomal protein L20.	50S ribosomal protein L28.	0.982
GWL_14080	GWL_11620	GWL_14080	GWL_11620	50S ribosomal protein L20.	Lipase transmembrane protein.	0.607
GWL_14080	rplC	GWL_14080	GWL_42920	50S ribosomal protein L20.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.994
GWL_14080	rplL	GWL_14080	GWL_42820	50S ribosomal protein L20.	50s ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.994