Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
GWL_11830D-serine deaminase. (430 aa)    
Predicted Functional Partners:
GWL_11850
N-acyl-D-glutamate deacylase.
 
   
 0.906
GWL_11840
Transcription regulator protein.
 
   
 0.830
GWL_11860
Translation initiation inhibitor protein.
 
   
 0.765
GWL_32840
Oxidoreductase.
  
 
  0.739
GWL_11820
Sugar kinase,ribokinase family protein.
     
 0.734
GWL_04670
2-keto-4-hydroxyglutarate aldolase/-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
  0.494
GWL_06840
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase.
  
  
  0.470
GWL_03900
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
  
  0.467
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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