Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_11860Translation initiation inhibitor protein. (127 aa)    
Predicted Functional Partners:
GWL_05130
Translation initiation inhibitor protein.
  
     0.772
GWL_11830
D-serine deaminase.
 
   
 0.765
GWL_11850
N-acyl-D-glutamate deacylase.
 
   
 0.746
GWL_11840
Transcription regulator protein.
 
   
 0.708
GWL_30580
Chorismate mutase/prephenate dehydratase.
    
 0.694
GWL_09760
Para-aminobenzoate synthetase component I protein.
    
 0.629
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
 
 0.621
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.606
GWL_25020
Aromatic-amino-acid aminotransferase.
   
  0.530
GWL_37770
Aspartate/tyrosine/aromatic aminotransferase.
   
  0.530
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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