Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_12290DNA-binding repressor transcription regulator protein. (167 aa)    
Predicted Functional Partners:
GWL_14980
TPR repeat containing protein.
     
 0.737
GWL_34780
Bacteriophage-related tail transmembrane protein.
  
     0.730
GWL_09940
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.704
GWL_34760
Bacteriophage-related tail protein.
  
     0.695
GWL_34740
Bacteriophage major tail sheath protein.
  
     0.694
GWL_34640
Bacteriophage tail completion-like protein.
  
     0.687
GWL_34660
Phage P2 baseplate assembly gpV protein.
  
   
 0.684
GWL_34800
Bacteriophage-related tail D protein.
  
   
 0.681
GWL_34680
Phage P2 baseplate assembly protein.
  
   
 0.680
GWL_34750
Bacteriophage-related major tail tube FII protein.
  
     0.679
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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