Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_12300Spermidine synthase. (274 aa)    
Predicted Functional Partners:
GWL_11480
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
  
 
 0.891
GWL_23470
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
    
  0.880
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.805
GWL_28550
Arginine/lysine/ornithine decarboxylase.
  
 
 0.804
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.799
GWL_42310
Arginase/agmatinase/formimionoglutamate hydrolase; Belongs to the arginase family.
  
 
 0.794
GWL_37370
5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase.
    
 0.791
GWL_14810
Flagellar motor switch protein FliM.
   
   0.777
GWL_08830
Carbon-nitrogen hydrolase family protein.
  
 
 0.760
amiE
Aliphatic amidase; Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.
  
 
 0.760
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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