Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_12500Hypothetical protein. (109 aa)    
Predicted Functional Partners:
GWL_12490
MocR family transcription regulator protein.
       0.716
GWL_14310
GDP-mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 0.532
GWL_12480
Translation initiation inhibitor protein.
       0.503
GWL_13930
CheC, inhibitor of MCP methylation.
    
   0.503
GWL_23310
Flagellar motor component protein.
    
   0.503
GWL_10270
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
  
  0.439
GWL_46080
GNAT family acetyltransferase.
 
  
 0.432
GWL_30580
Chorismate mutase/prephenate dehydratase.
  
 
 0.428
GWL_22150
GNAT family acetyltransferase.
    
 0.425
GWL_38190
Carboxymuconolactone decarboxylase.
 
  
  0.425
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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