Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GWL_12600Multidrug ABC transporter permease. (378 aa)    
Predicted Functional Partners:
GWL_12580
Type I antifreeze protein:HlyD family secretion protein.
 
  
 0.976
GWL_12590
Multidrug ABC transporter ATPase.
 
 
0.972
macB
Antimicrobial peptide ABC transporter ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
  
 0.830
GWL_35170
Multidrug ABC transporter ATPase.
  
 
 0.789
GWL_12570
Outer membrane drug efflux lipoprotein.
     
 0.786
GWL_01070
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.780
GWL_38330
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
  
 
 0.780
GWL_42060
ABC transporter ATPase.
  
 
 0.780
GWL_46050
Sugar ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
 
 0.780
GWL_33530
ABC transporter ATPase.
    
  0.760
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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