Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GWL_12710Transcription regulator protein. (316 aa)    
Predicted Functional Partners:
GWL_12720
Peptidase T2, asparaginase 2 protein.
 
    0.923
GWL_12780
D-aminopeptidase.
 
     0.745
GWL_12730
ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
    0.730
GWL_12740
Dipeptide ABC transporter periplasmic protein.
 
     0.626
GWL_12770
L-aminopeptidase/D-esterase.
 
    0.595
GWL_09500
2-ketogluconate kinase.
 
  
 0.507
GWL_12700
Hypothetical protein.
       0.507
GWL_04670
2-keto-4-hydroxyglutarate aldolase/-keto-3-deoxy-6-phosphogluconate aldolase.
 
  
 0.503
GWL_03900
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
  
 0.478
GWL_11820
Sugar kinase,ribokinase family protein.
 
  
 0.456
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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