Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_13490Threonyl/alanyl tRNA synthetase SAD protein. (213 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
 0.824
GWL_17560
Exonuclease RNase T and DNA polymerase III.
    
   0.631
GWL_13500
LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.552
GWL_15170
Aspartate aminotransferase.
    
  0.400
GWL_15890
Succinyldiaminopimelate aminotransferase.
    
  0.400
GWL_20270
Aspartate/tyrosine/aromatic aminotransferase.
    
  0.400
GWL_23530
Pyridoxal phosphate dependent aspartate/tyrosine/aromatic aminotransferase.
    
  0.400
GWL_29380
Aspartate/tyrosine/aromatic aminotransferase.
    
  0.400
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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