Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_13570Transcription regulator protein. (141 aa)    
Predicted Functional Partners:
GWL_10330
Chloride channel EriC protein.
 
     0.767
GWL_13590
CBS-domain-containing membrane protein.
 
     0.639
GWL_18660
Cytochrome c family protein.
     
  0.599
GWL_13560
LacI family transcription regulator protein.
     
 0.543
GWL_18600
Putative transport permease.
  
  
  0.488
GWL_09890
Signal peptide protein.
  
     0.476
GWL_10350
Phospholipase C protein.
  
     0.454
GWL_31280
Oxygen-insensitive nitroreductase.
 
 
 0.450
GWL_13760
Hypothetical protein.
 
   
 0.447
GWL_31220
Porin signal peptide protein.
  
     0.431
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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