GWL_13740 protein (Herbaspirillum sp. GW103)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GWL_13740

sigma-E factor regulatory (negative regulator) transcription regulator protein. (313 aa)

Predicted Functional Partners:

GWL_13730

0.998

GWL_13720

0.949

GWL_13750

0.848

GWL_03840

0.778

rpoD

0.746

rpoS

0.746

GWL_21570

0.745

GWL_03650

0.720

GWL_11660

0.720

GWL_18530

0.720

Your Current Organism:

Herbaspirillum sp. GW103

NCBI taxonomy Id: 1175306
Other names: H. sp. GW103

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GWL_03650	GWL_13730	GWL_03650	GWL_13730	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	0.926
GWL_03650	GWL_13740	GWL_03650	GWL_13740	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	sigma-E factor regulatory (negative regulator) transcription regulator protein.	0.720
GWL_03650	rpoD	GWL_03650	GWL_02820	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.579
GWL_03650	rpoS	GWL_03650	GWL_23000	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma S (sigma38) factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.579
GWL_03840	GWL_13730	GWL_03840	GWL_13730	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	0.932
GWL_03840	GWL_13740	GWL_03840	GWL_13740	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	sigma-E factor regulatory (negative regulator) transcription regulator protein.	0.778
GWL_03840	GWL_21570	GWL_03840	GWL_21570	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.576
GWL_03840	rpoD	GWL_03840	GWL_02820	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.617
GWL_03840	rpoS	GWL_03840	GWL_23000	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma S (sigma38) factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.619
GWL_11660	GWL_13730	GWL_11660	GWL_13730	RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein.	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	0.947
GWL_11660	GWL_13740	GWL_11660	GWL_13740	RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein.	sigma-E factor regulatory (negative regulator) transcription regulator protein.	0.720
GWL_11660	rpoD	GWL_11660	GWL_02820	RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein.	RNA polymerase sigma-70 factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.579
GWL_11660	rpoS	GWL_11660	GWL_23000	RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein.	RNA polymerase sigma S (sigma38) factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.579
GWL_13720	GWL_13730	GWL_13720	GWL_13730	RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	0.975
GWL_13720	GWL_13740	GWL_13720	GWL_13740	RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.	sigma-E factor regulatory (negative regulator) transcription regulator protein.	0.949
GWL_13720	GWL_13750	GWL_13720	GWL_13750	RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.	Periplasmic trypsin-like serine protease; Belongs to the peptidase S1C family.	0.516
GWL_13720	rpoD	GWL_13720	GWL_02820	RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma-70 factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.617
GWL_13720	rpoS	GWL_13720	GWL_23000	RNA polymerase sigma-E factor (sigma-24) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase sigma S (sigma38) factor protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.	0.673
GWL_13730	GWL_03650	GWL_13730	GWL_03650	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.	0.926
GWL_13730	GWL_03840	GWL_13730	GWL_03840	Transmembrane sigma-E factor negative regulatory transcription regulator protein.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.932