Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_15250SAM-dependent methyltransferase. (217 aa)    
Predicted Functional Partners:
GWL_18480
Hypothetical protein.
 
  
 0.847
GWL_15240
Molybdopterin converting factor small subunit.
       0.784
GWL_32060
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
   
 0.725
GWL_45210
Octaprenyldiphosphate synthase; Belongs to the FPP/GGPP synthase family.
   
 0.725
GWL_15220
Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
   
 
 0.688
GWL_32790
Hypothetical protein.
  
 
 0.681
GWL_15230
Protein of unknown function DUF817.
       0.675
GWL_19210
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
    
 0.652
GWL_18450
Hypothetical protein.
  
  
 0.649
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
    
 0.613
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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