Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_15310Multidrug resistance efflux pump protein. (324 aa)    
Predicted Functional Partners:
GWL_15340
NodT family protein.
 
 0.956
GWL_15330
Fusaric acid resistance membrane protein.
 
  
 0.938
GWL_22310
Outer membrane channel lipoprotein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
 
 0.904
GWL_28680
Hypothetical protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 0.890
GWL_21650
NodT family protein.
 
 0.870
GWL_15320
Hypothetical protein.
 
     0.866
GWL_44160
Outer membrane channel lipoprotein.
 
 0.866
GWL_09750
NodT family protein.
 
 0.865
GWL_26520
Outer membrane multidrug resistance lipoprotein.
 
 0.860
GWL_19280
Outer membrane channel lipoprotein.
 
 0.857
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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