Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GWL_15750Major facilitator superfamily permease. (423 aa)    
Predicted Functional Partners:
GWL_18520
MbtH-like protein.
  
 
 0.884
GWL_18450
Hypothetical protein.
  
 
 0.805
GWL_15760
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
  
  0.777
GWL_23240
Hypothetical protein.
  
     0.693
flhD
Flagellar transcription activator protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
  
     0.658
GWL_10410
Medium-chain-fatty-acid CoA ligase.
    
 0.656
GWL_31910
long-chain-fatty-acid-CoA ligase.
    
 0.656
GWL_32420
long-chain-fatty-acid-CoA ligase.
    
 0.656
GWL_33890
Long chain acyl-CoA synthetase.
    
 0.656
GWL_37880
Hypothetical protein.
    
 0.656
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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