Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GWL_16400Secreted glycine/D-amino acid oxidase. (400 aa)    
Predicted Functional Partners:
phnX
Phosphonoacetaldehyde phosphonohydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
  
  0.965
GWL_33030
Glutamate synthase large subunit oxidoreductase.
  
 
 0.818
GWL_17410
Hypothetical protein.
 
 
 0.798
GWL_38490
BFD-like protein.
 
 
 0.798
GWL_45120
BFD-like protein (2Fe-2S)-binding protein.
 
 
 0.796
GWL_16420
Fe3+ ABC transporter permease.
 
    0.757
GWL_06610
HD phosphohydrolase.
 
     0.693
GWL_16410
Fe3+ ABC transporter periplasmic protein.
 
     0.685
GWL_37360
Methionine synthase I, cobalamin-binding domain-containing protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.672
GWL_45860
Putative thiamine biosynthesis protein ThiS.
  
 
 0.597
Your Current Organism:
Herbaspirillum sp. GW103
NCBI taxonomy Id: 1175306
Other names: H. sp. GW103
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